- You need to sign into Terra with your Google account. This is the only way you can launch applications and perform computations on AnVIL. Launch AnVIL at https://anvil.terra.bio/, and you should be prompted to sign in with your Google account.
Setup on AnVIL
Setup on AnVIL
⚠️ Make sure you provide your Google login information to the instructor! ⚠️
Setup on AnVIL
Go to the Class Workspace at https://anvil.terra.bio/#workspaces/data-wrangling-workshop/SISBID-data-wrangling-2022
Clone the Workspace
Click on the teardrop button and select “Clone”.
Clone the Workspace
Name your Workspace (use your name!) and select the “SISBID-Wrangling-2022-student” billing project.
Launch RStudio
Once in your newly cloned Workspace, you can launch the cloud instance! Click on “Cloud Environment” on the top right.
Launch RStudio
Click “CUSTOMIZE”.
Launch RStudio
From the “Application configuration” menu, select “RStudio 4.2.0, Bioconductor 3.15, Python 3.8.10”.
Launch RStudio
Click “CREATE”. Your Cloud Environment will take a few minutes to spin up.
Open RStudio
Click on “OPEN RSTUDIO” when the environment is ready.
Create the Project
Once in RStudio, select the “New Project” button.
Create the Project
Select “Version Control”.
Create the Project
Enter the URL : https://github.com/SISBID/Data-Wrangling. Make sure the Project is a subdirectory of ~. Click “Create Project”.
Create the Project
You should now see files listed in your workspace (including some datasets we’ll be using). Feel free to change any files here - they are yours now! For the most up-to-date versions of files, please visit the website: http://sisbid.github.io/Data-Wrangling/.
Pause the Environment
It’s very important to stop your cloud environment when you are done so you don’t accumulate too many charges. Between class sessions, you can click the pause button on the top right. This frees up resources for others!
